MOMD:
Mouse Oral Microbiome Database
Home
Taxonomy
Genomics
Tools
16S rRNA Gene Idnetification
BLAST Search Genomes
Download
Publication
MOMD Genome Explorer
Selected genome:
Escherichia coli
19428wD4_HM13
Change genome:
Available genomes
1. Actinomyces bowdenii WMus004.1
2. Bacteroides acidifaciens 19428wH3_P2318
3. Bacteroides acidifaciens 8_33DSS_C5_S8
4. Citrobacter koseri 19428wH4_BL23
5. Dysgonomonas mossii 19428wE4_P11
6. Enterococcus gallinarum 19428wB3_C2
7. Enterococcus gallinarum ENT.1
8. Escherichia coli 19428wD4_HM13
9. Gemella palaticanis CIP106318T.1
10. Gemella sp. 19428wG2_WT2a
11. Gemella sp. GH3.1
12. Gemella sp. GL1.1
13. Granulicatella sp. 19428wC4_WM01
14. Jeotgalicoccus nanhaiensis 19428wE5_W307
15. Lactobacillus johnsonii 19428wE2_CC3
16. Lactobacillus murinus LAC.1
17. Ligilactobacillus murinus 19428wF2_HT12
18. Ligilactobacillus murinus 2_2BalbC1BO2_S2
19. Mammaliicoccus lentus 19428wC1_HT5
20. Mammaliicoccus lentus 19428wG1_AE2
21. Mammaliicoccus lentus 3_3BalbC2O2_S3
22. Mammaliicoccus sciuri 19428wE1_BL01
23. Mammaliicoccus sciuri ACT.1
24. Microbacterium paludicola 19428wA4_P1012
25. Micrococcus aloeverae 19428wE3_DK2
26. Micrococcus yunnanensis 19428wG4_IOV6
27. Muribacter muris 19428wC3_WT12
28. Muribacter muris 7_18CXCR221ANO_S7
29. Neisseria sp. 19428wB4_WF04
30. Parabacteroides goldsteinii 19428wG3_P14
31. Pasteurella sp. 19428wF3_WM03
32. Proteus mirabilis 19428wB5_irhom_Sw
33. Providencia alcalifaciens WMus003.1
34. Rothia nasimurium 19428wA5_irhom_31
35. Sanguibacter inulinus DSM100099.1
36. Shigella flexneri 19428wH2_1568
37. Staphylococcus arlettae 19428wH1_IOV5
38. Staphylococcus aureus 19428wD1_P36
39. Staphylococcus aureus 4_5BalbC4O2_S4
40. Staphylococcus aureus STF.1
41. Staphylococcus capitis GW2.1
42. Staphylococcus saprophyticus 19428wB1_WM06
43. Staphylococcus warneri 19428wF1_P912
44. Staphylococcus xylosus 19428wA1_WT6
45. Streptococcus acidominimus 19428wB2_HT4
46. Streptococcus acidominimus 6_8CXCR23O2_S6
47. Streptococcus cuniculi 19428wD2_WM131
48. Streptococcus danieliae 1_1BalbC1O2_S1
49. Streptococcus danieliae STR.1
50. Streptococcus sp. 19428wA2_WM07
51. Streptococcus sp. 19428wC2_LYSM12
52. Streptococcus sp. 19428wD3_AN2
from a total of 52 genomes
Available tools:
Genome Viewer
PROKKA Annotation
NCBI Annotation
BLAST Against Genome
Genome Info
Taxon Description
Quick search
:
Match all words
Match any words
Match exact phrase
Partially
In whole field
(leave empty to show all)
PROKKA Genome Annotation:
contigs: 110
bases: 5,033,648 bps
CDS: 4,645
rRNA: 10
Repeat region:
tmRNA: 1
tRNA: 79
misc RNA:
Total features: 4,735
Total number of protein coding genes annotated/found:
4,645
Display
20
50
100
All items per page
Items 1 - 20
🡆
click arrow to navigate by page or
of 233 pages
Molecule
PID/GenBank ID *^
Sequences
Size (NA/AA) ^
Range ^
Gene Product Name
SEQF5033|JADGMH010000082.1
SEQF5033_04326
Genome Viewer
NA
AA
384/128
8-391
hypothetical protein
SEQF5033|JADGMH010000011.1
SEQF5033_00146
Genome Viewer
NA
AA
288/96
1586-1299
Ethanolamine utilization protein EutN
SEQF5033|JADGMH010000011.1
SEQF5033_00147
Genome Viewer
NA
AA
336/112
2028-1693
Ethanolamine utilization protein EutM
SEQF5033|JADGMH010000011.1
SEQF5033_00148
Genome Viewer
NA
AA
1017/339
3041-2025
Ethanolamine utilization protein EutD
SEQF5033|JADGMH010000011.1
SEQF5033_00149
Genome Viewer
NA
AA
804/268
3841-3038
hypothetical protein
SEQF5033|JADGMH010000011.1
SEQF5033_00150
Genome Viewer
NA
AA
702/234
4539-3838
Ethanolamine utilization protein EutQ
SEQF5033|JADGMH010000011.1
SEQF5033_00151
Genome Viewer
NA
AA
480/160
4993-4514
Propanediol utilization protein PduV
SEQF5033|JADGMH010000011.1
SEQF5033_00152
Genome Viewer
NA
AA
336/112
5341-5006
Ethanolamine utilization protein EutS
SEQF5033|JADGMH010000011.1
SEQF5033_00153
Genome Viewer
NA
AA
2280/760
7913-5634
NADP-dependent malic enzyme
SEQF5033|JADGMH010000011.1
SEQF5033_00154
Genome Viewer
NA
AA
951/317
8202-9152
Transaldolase
SEQF5033|JADGMH010000011.1
SEQF5033_00155
Genome Viewer
NA
AA
2004/668
9172-11175
Transketolase 2
SEQF5033|JADGMH010000011.1
SEQF5033_00156
Genome Viewer
NA
AA
999/333
12250-11252
hypothetical protein
SEQF5033|JADGMH010000011.1
SEQF5033_00157
Genome Viewer
NA
AA
576/192
12996-12421
GDP-mannose pyrophosphatase NudK
SEQF5033|JADGMH010000011.1
SEQF5033_00158
Genome Viewer
NA
AA
1980/660
15043-13064
Ferredoxin--NADP reductase
SEQF5033|JADGMH010000011.1
SEQF5033_00159
Genome Viewer
NA
AA
1701/567
15249-16949
Nitrate/nitrite sensor protein NarQ
SEQF5033|JADGMH010000011.1
SEQF5033_00160
Genome Viewer
NA
AA
3114/1038
17113-20226
Multidrug efflux pump subunit AcrB
SEQF5033|JADGMH010000011.1
SEQF5033_00161
Genome Viewer
NA
AA
357/119
20765-21121
Protein YffB
SEQF5033|JADGMH010000011.1
SEQF5033_00162
Genome Viewer
NA
AA
1128/376
21125-22252
Succinyl-diaminopimelate desuccinylase
SEQF5033|JADGMH010000011.1
SEQF5033_00163
Genome Viewer
NA
AA
201/67
22280-22480
hypothetical protein
SEQF5033|JADGMH010000011.1
SEQF5033_00164
Genome Viewer
NA
AA
717/239
23277-22561
hypothetical protein
Items 1 - 20
🡆
click arrow to navigate by page or
of 233 pages
Genome Viewer
JBrowse Genome Viewer
* Click GI, UID, Gene Product to go to NCBI record
^ Click column names to toggle sorting
Copyright 2020 Forsyth Institute
Page last updated: July 7, 2021 08:39:35
Powered by